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Sierra Castillo L, Fujiwara M. (2021). Assessment of a small-scale fishery: Lane Snapper (Lutjanus synagris) using a length metric method. PLoS One 16:e0233479. (DOI:10.1371/journal.pone.0233479).

Pawluk M, Fujiwara M, Martinez-Andrade F. (2021). Climate effects on fish diversity in the subtropical bays of Texas. Estuarine, Coastal and Shelf Science 249. (DOI:10.1016/j.ecss.2020.107121).

Sierra Castillo L, Pawluk M., Fujiwara M. (2020). Estimating mortality for the assessment of a small-scale fishery: Lane snapper (Lutjanus synagris) in Honduras. Fisheries Research 231. (DOI:10.1016/j.fishres.2020.105709).

Zhang C, Fujiwara M, Pawluk M, Liu H, Cao W, Gao X. (2020). Changes in taxonomic and functional diversity of fish communities after catastrophic habitat alteration caused by construction of Three Gorges Dam. Ecology and Evolution 10:5829-5839. (DOI:10.1002/ece3.6320).

Fujiwara M, Martinez-Andrade F, Wells RJD, Fisher M, Pawluk M, Livernois MC. (2019). Climate-related factors cause changes in the diversity of fish and invertebrates in subtropical coast of the Gulf of Mexico. Communications Biology 2. (DOI:10.1038/s42003-019-0650-9)

Al-Badran AA, Fujiwara M, Mora MA. (2019). Effects of insecticides, fipronil and imidacloprid, on the growth, survival, and behavior of brown shrimp Farfantepenaeus aztecus. PLoS One 14:e0223641 (DOI:10.1371/journal.pone.0223641).

Kendall BE, Fujiwara M, Diaz-Lopez J, Schneider S, Voigt J, Wiesner S. (2019). Persistent problems in the construction of matrix population models. Ecological Modelling 406:33-43. (DOI:10.1016/j.ecolmodel.2019.03.011)

Kouhanestani ZM, Roelke DL, Ghorbani R, Fujiwara M. (2019). Assessment of Spatiotemporal Phytoplankton Composition in Relation to Environmental Conditions of Gorgan Bay, Iran. Estuaries and Coasts 42:173-189. (DOI:10.1007/s12237-018-0451-2)

Gao X, Fujiwara M, Winemiller KO, Lin P, Li M, Liu H. (2019). Regime shift in fish assemblage structure in the Yangtze River following construction of the Three Gorges Dam. Scientific Reports 9:4212. (DOI:10.1038/s41598-019-38993-x)

Wang T, Fujiwara M, Gao X, Liu H. (2019). Minimum viable population size and population growth rate of freshwater fishes and their relationships with life history traits. Scientific Reports 9:3612. (DOI:10.1038/s41598-019-40340-z)

Fujiwara M, Backstrom JD, Woodward RT. (2018). A coupled recreational anglers' decision and fish population dynamics model. PLoS One 13. (DOI:10.1371/journal.pone.0206537)

Fujiwara M. (2018). Selection of trilateral continuums of life history strategies under food web interactions. Scientific Reports 8:8. (DOI:10.1038/s41598-018-22789-6)

Al-Badran AA, Fujiwara M, Gatlin DM, Mora MA. (2018). Lethal and sub-lethal effects of the insecticide fipronil on juvenile brown shrimp Farfantepenaeus aztecus. Scientific Reports 8:12. (DOI:10.1038/s41598-018-29104-3)

Kouhanestani ZM, Ghorbani R, Fujiwara M, Rabaniha M, Amini K, Mahmoodi S. (2018). Identification of larval stages of fish in southeastern coastal waters of the Caspian Sea-Golestan Province. Iranian Journal of Fisheries Sciences. (DOI:10.22092/ijfs.2018.119806)

Fujiwara M, Takada T. (2017). Environmental Stochasticity. Encyclopedia of Life Sciences. John Wiley & Sons, Ltd: Chichester. (DOI:10.1002/9780470015902.a0021220.pub2)

Fujiwara M, Diaz-Lopez J. (2017). Constructing stage-structured matrix population models from life tables: comparison of methods. PeerJ 5. (DOI:10.7717/peerj.3971)

Zhou, C., M. Fujiwara, W. Grant (2016). Finding regulation among seemingly unregulated populations: a practical framework for analyzing multivariate population time series for their interactions. Environmental and Ecological Statistics 23(2): 181-204.(DOI:10.1007/s10651-015-0334-7)

Fujiwara, M., C. Zhou, C., Acres, F. Matinez-Andrade. (2016). Interaction between Penaeid Shrimp and Fish Populations in the Gulf of Mexico: Importance of Shrimp as Forage Species. PLoS One 11(11). (DOI:10.1371/journal.pone.0166479)

Fujiwara, M. (2016) Incorporating demographic diversity into food web models: Effects on community structure and dynamics. Ecological Modelling, 322: 10-18.

Bani-Yaghoub, M., Y. Guangming, M. Fujiwara, D.E. Amundsen. (2015) Understanding the interplay between density dependent birth function and maturation time delay using a reaction-diffusion population model. Ecological Complexity, 21: 14-26. (DOI:10.1016/j.ecocom.2014.10.007)

Fujiwara. M., J.E. Cohen (2014) Mean and variance of population density and temporal Taylor’s law in stochastic stage-structured density-dependent models of exploited fish populations. Theoretical Ecology (DOI:10.1007/s12080-014-0242-8)

Baker, R., M. Fujiwara, T.J. Minello (2014) Juvenile growth and mortality effects on white shrimp Litopenaeus setiferus population dynamics in the northern Gulf of Mexico. Fisheries Research . 155:74-82 (DOI:10.1016/j.fishres.2014.02.026)

Fujiwara, M., Mohr, M.S., Greenberg, A. (2013) The effects of disease-induced juvenile mortality on the transient and asymptotic population dynamics of Chinook salmon (Oncorhynchus tshawytscha) PLoS One 9(1): e85464. (DOI:10.1371/journal.pone.0085464)

Zhou, C., Fujiwara, M., Grant, W.E. (2013) Dynamics of a predator–prey interaction with seasonal reproductionand continuous predation. Ecological Modelling 268: 25-36 (DOI:10.1016/j.ecolmodel.2013.07.028)

Fujiwara, M., Zhou, C. (2013) Population dynamics of stage-structured sequential hermaphrodites. Canadian Journal of Fisheries and Aquatic Sciences 70: 1296-1305 (DOI:10.1139/cjfas-2012-0520)

Anderson, K.E., Fujiwara, M., Rothstein, S.I. (2012) Demography and dispersal of juvenile and adult Brown-headed cowbirds (Molothrus ater) in the eastern Sierra Nevada, California, estimated using multistate models. The Auk 129 (2):307-318 (DOI:10.1525/auk.2012.11164)

Gil-Weir, K.C., Grant, W.E., Slack, R.D., Wang, H., and Fujiwara, M. (2012) Demography and population trends of Whooping Cranes. Journal of Field Ornithology 83(1): 1–10 (DOI:10.1111/j.1557-9263.2011.00349.x)

Fujiwara, M. (2012) Demographic diversity and sustainable fisheries. PLoS One 7(5): e34556 (DOI:10.1371/journal.pone.0034556)

Fujiwara, M., Pfeiffer, G., Boggess, M., Day, S., Walton, J. (2011) Coexistence of competing stage-structured populations. Scientific Reports 1, 107 (DOI:10.1038/srep00107)

Kendall, B.E., Fox, G.A., Fujiwara, M., Nogeire, T. (2011) Demographic Heterogeneity, Cohort Selection and Population Growth. Ecology 92(10): 1985-1993 (DOI:10.1890/11-0079.1)

Fujiwara, M., Mohr, M.S., Greenberg, A., Foott, J.S., Bartholomew, J.L. (2011) Effects of Ceratomyxosis on Population Dynamics of Klamath Fall-Run Chinook Salmon. Transactions of American Fisheries Society 140:1380–1391 (DOI:10.1080/00028487.2011.621811)

Fujiwara, M. Mohr M.S.(2009) Identifying multiple environmental signals from population time-series: Application to salmon spawner counts. Oikos 118: 1712-172 (PDF)

Wiedenmann, J., Fujiwara, M., Mangel, M. (2009) Transient population dynamics and viable stage or age distributions for effective conservation and recovery. Biological Conservation 142: 2990-2996 (DOI:10.1016/j.biocon.2009.07.031)

Fujiwara, M. (2009) Environmental Stochasticity. In: Encyclopedia of Life Sciences. John Wiley & Sons, Ltd: Chichester. (DOI:10.1002/9780470015902.a0021220)

Fujiwara, M. (2008) Identifying interactions among salmon populations from observed dynamics. Ecology 89: 4-11 (PDF)

Fujiwara, M. (2008) Effects of an autocorrelated stochastic environment and fisheries on the age at maturity of Chinook Salmon (Oncorhynchus tshawytscha). Theoretical Ecology (DOI:10.1007/s12080-007-0008-7)

Fujiwara, M. (2007) Extinction-effective population index for population comparisons. Ecology 88: 2345-2353 (PDF)

Fujiwara M., Anderson K.E., Neubert M.G., Caswell H (2006) On the estimation of dispersal kernels from individual mark-recapture data. Environmental and Ecological Statistics 13: 183-197 (DOI:10.1007/s10651-005-0007-z)

Kraus, S.D., M.W. Brown, H. Caswell, C.W. Clark, M. Fujiwara, P.K. Hamilton, R.D. Kenney, A.R. Knowlton, S. Landry, C.A. Mayo, W.A. McLellan, M.J. Moore, D.P. Nowacek, D.A. Pabst, A.J. Read, R.M. Rolland (2005) North Atlantic Right Whales in Crisis. Science 309: 561-562 (DOI:10.1126/science.1111200)

Fujiwara, M., Kendall, B, Nisbet, R., and Bennett, W. (2005) Analysis of size trajectory data using an energetic-based growth model. Ecology 86 (6): 1441-1451 (PDF)

Harding, K., Fujiwara, M., Harkonen, T., and Axberg, Y. (2005) Mass-dependent energetics and survival in harbour seal pups. Functional Ecology 19: 129-135 (DOI:10.1111/j.0269-8463.2005.00945.x)

Caswell, H. and Fujiwara, M. (2004) Beyond survival estimation: mark-recapture, matrix population models, and population dynamics. Animal Biodiversity and Conservation 27.1: 471-488 (PDF)

Fujiwara, M., Kendall, B.E., and Nisbet, R.M. (2004) Growth autocorrelation and animal size variation. Ecology Letters 7(2): 104-113 (PDF)

Fujiwara, M. and Caswell, H. (2002) A general approach to temporary emigration in mark-recapture analysis. Ecology 83(12): 3266-3275 (PDF)

Fujiwara, M. and Caswell, H. (2002) Estimating population projection matrices from multi-stage mark-recapture data. Ecology 83(12): 3257-3265 (PDF)

Fujiwara, M. and Caswell, H. (2001) Demography of the endangered North Atlantic right whale. Nature 414: 537-541 (DOI:10.1038/35107054)

Neubert, M.G. and Fujiwara, M. (2000) Book Reviews: Introduction to Chaos: Physics and mathematics of Chaotic phenomena, by Hiroyuki Nagashima and Yoshikazu Baba. Translated by Mikio Nakahara. Institute of Physics Publishing, Bristol, UK. SIAM Review 42: 756-758

Caswell, H., Fujiwara, M., and Brault, S. (1999) Declining survival probability threatens the North Atlantic right whale. Proceedings of the National Academy of Sciences USA 96: 3308-3313 (DOI:10.1073/pnas.96.6.3308)